RNA Doctoral Program — DEV

Program Overview

This novel, PhD-level training program for current University at Albany students provides a multi-disciplinary curriculum with a focus on RNA and its health relevance. We develop our future science leaders by providing students with access to faculty, techniques, and collaborations within UAlbany, including The RNA Institute, and the College of Nanotechnology Science & Engineering.

The participating students are selected from PhD programs within the UAlbany departments of Biological Sciences, Biomedical Sciences, and Chemistry, and Nanoscale Science and Engineering.

Funded in part by a T32 NIH training grant, the program supports a comprehensive, intellectually rigorous, and individualized PhD training experience. The training program is run by The RNA Institute, which is housed in and sponsored by the UAlbany College of Arts and Sciences.

The program also offers resource-faculty with RNA interests from the UAlbany Mathematics and Physics departments. The participating faculty represents a unique assembly of RNA expertise, ranging from single-molecule biophysics and chemical synthesis to developmental biology and infectious diseases.

Visit the RNA Training Program Faculty Page.
 

 

An infographic explaining the department structure for the RNA Doctoral Program. Detailed alternative text is available in the accordion directly underneath this photo.

 

overview
Alternative Text for Infographic
Alternative Text for Infographic

The RNA Institute, University at Albany

Colleges

  • Colleges of Arts and Sciences
  • School of Public Health
  • College of Nanotechnology, Science and Engineering

Departments

  • The RNA Institute
    • Biological Sciences
    • Chemistry
    • Biomedical Sciences
    • Nanoscale Science and Engineering

Research and Training

  • Cutting-edge research
  • Flagship courses
  • Training tracks
    • Entrepreneurship and Industry
    • Publicized Science

Events

  • Hudson Valley RNA Club
  • STEMTriCS
  • Stranded in Science
  • Annual RNA Symposium
  • Life at the Interface of Science and Engineering
Marlene Belfort and student David Bunn - RNA Institute

Program Outcomes

Students will develop a basic understanding of RNA science and transform knowledge into technical applications. 

Trainees have the unique opportunity to choose mentors in one of the four departments, participate in cross-departmental collaborations, and have faculty members from all four departments or Physics and Mathematics serve on their thesis committee. 

We will thus ensure a broad experience that prepares our students for a wide range of career options.

outcomes


 

How to Apply for the Doctoral RNA Training Program

All admissions to graduate programs at the University at Albany are handled by the Offices of Graduate Education. UAlbany program deadlines and admission requirements can be found on the Graduate Programs webpage. Contact UAlbany's Graduate School at [email protected] or 518-442-3980 with questions about admission procedures.

You should in your application express interest in being selected for the RNA Training Program. Students will be admitted into the program after their first year of study in one of the PhD programs.

If you are admitted to our program, you will be asked to select several laboratories in which to do rotations before you join one for your PhD work.

Visit the previous and current cohorts of the RNA Doctoral Fellowship program.

apply


 

Doctoral Training Leadership

leadership
Program Directors
Program Directors
Thomas Begley

Dr. Marlene Belfort - Senior Advisor

Marlene Belfort is a Distinguished Professor in the Department of Biological Sciences, a member of the National Academy of Sciences and a fellow of the American Academy of Arts and Sciences. She has trained many PhD students and postdoctoral fellows, some of whom have pursued careers at prestigious universities and biotech companies. Dr. Belfort is experienced in administering NIH training grants.

Training Program Faculty Members
Training Program Faculty Members

The RNA Training Program faculty includes members from four UAlbany departments Biological Sciences, Biomedical Sciences, Chemistry, and Nanoscale Science and Engineering. In addition, we have resource-faculty from the departments of Mathematics and Physics at UAlbany.

Visit the RNA Training Program Faculty Page.

 

Program Curriculum and Courses

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Curriculum
Curriculum

The training program has developed a curriculum based on the national need for interdisciplinary training, in the general area of RNA Science and Technology in Health and Disease, to prepare students for jobs in academia, industry, government, communication, scientific foundations, and other private sector enterprises. 

View the RNA Fellowship Checklist of Requirements.
 

First Year

Students in the program complete a series of core courses required of their home departments, followed by courses on specific topics of interest in subsequent years. Students also undertake research rotations during their first year and then select a research advisor. Students will usually be selected for the training program in the Spring (second) semester of their first year.
 

Second Year and Beyond

During their studies, trainees will take the two-semester RNA Flagship course. Other departmental electives can be selected. They will also present their work at the RNA Colloquium Program. At each colloquium given by an RNA Fellow they present on a topic that is broadly defined as the role of RNA in their research project or lab’s research area.

Students opt for the Entrepreneurship or Writing Workshop. Throughout their training, students will attend both their departmental and RNA-specific seminars.

Trainees, who are supported by teaching assistantships, will receive ample opportunities to teach. During their research training they will also be called upon to supervise undergraduates, allowing them to develop mentoring skills.

RNA Flagship Courses
RNA Flagship Courses

The courses usually meet for 110 minutes twice a week over a 13-week period, for a total of about 48 contact hours per semester.
 

RNA in Development, Disease and Therapeutics (HBMS692)

Students will be introduced to the diversity of RNA molecules and their functions, and the therapeutic potential of RNA. 
 

Physical and Chemical Principles in RNA Biology (BIO619)

Students will learn about common RNA techniques, experience application of these techniques in journal club discussions and get to use computer programs to process data or visualize molecules.
 

Rigor and Reproducibility (BIO515A)

Students will learn basic statistical approaches and data analysis methods to design high quality experiments and interpret and report data with confidence. Rigor and reproducibility training is also provided though workshops and discussion group during the Annual RNA Symposium and summer RNA Retreat.

 

Program Tracks

tracks
Entrepreneurship & Industry Track
Entrepreneurship & Industry Track

Throughout a six-lecture workshop series students learn about and discus the process of deciding why and when it makes sense to commercialize scientific technology. Workshops focus on the patent process, when intellectual property should be protected, what constitutes inventorship and what gives a patent value.

Students dissect the patent process including how a patent is put together and the process of applying for a patent. In addition, students learn about what constitutes a claim set and what makes a patent strong or weak, using several issued patents as examples.

Publicizing Science Track
Publicizing Science Track

Science Writing

Scientists need not only write in lucid and creative ways, but to communicate their work to other scientists and to the public. Students trained to do experiments must be educated to write in ways that project their work and open doors to writing creatively in an increasingly competitive arena.

Science writing and communication constitute an important platform of education for RNA Trainees. They will have many opportunities to learn to write well including access to introductory courses, Communication in Science (BMS510) or Responsible conduct and Skills in Scientific Communication (BIO 515B) to promote effective scientific writing of journal articles and data presentation skills for posters and giving oral presentations.

Students will have even broader opportunities to hone their writing and communication skills through the New York State Writers Institute. The RNA Training Program and Writers Institute share common interdisciplinary goals including promoting creativity and critical thinking and a commitment to making something new.

Individuals who have written about science for a broader public and have visited the Writers Institute include premier scientists like Jon Beckwith, Michio Kaku, Eric Kandel, Steven Jay Gould, Steven Pinker, and V.S. Ramachandran, and science journalists such as Natalie Angier and James Gleick.
 

Science Communication with The Writers institute

Workshop: The science-writing workshop will consist of four 90-minute sessions with one session being held each month during the fall semester. All workshops will be led by Dr. Jill U. Adams. Dr. Adams is a scientific journalist and member of the National Association of Science Writers.

In the workshops, students will improve their own and each other’s science communication skills, primarily by learning to tailor communications to both the writers’ goals and their intended audiences. They will also learn about different science writing opportunities and careers. The expectation is that each fellow will produce a publication-worthy essay that could appear in the RNA Institute Newsletter, Trolley, the publication of the New York State Writers Institute, or similar publication. Dates and times of the workshops will be announced by Dr. Adams.

Popular science presentations: RNA fellows will attend at least one selected presentation related to popular science, sponsored by the renowned Writer’s Institute. Presentations will be announced once the Fall Writers Institute schedule is set.

 

Seminars, Colloquia and Conferences

seminars-colloquia-conferences
About
About

Scientific gatherings are invaluable to students, because they demonstrate how those highly skilled in a field present a seminar; expose students to basic approaches and principles which traverse disciplines; provide opportunities to discuss careers and decision-making processes; acquaint students with cutting edge, often unpublished, research results; and allow networking with scientists to increase job prospects.

RNA Fellows Colloquium
RNA Fellows Colloquium

In tandem with the Hudson Valley RNA Club (HVRC), RNA fellows have the opportunity to strengthen their public speaking abilities and explain their research to a diverse audience. Sponsored by our industry partners, this key series adds to the RNA fellow's professional development in the program. Below are a few examples of past sessions RNA fellows have participated in. 

 

Past Meetings & Events

 

December 15, 2020

Speaker: Jeff Hudson, Sales Manager at Lexogen
Title: Introduction of new Lexogen products

Speaker: Amber Altrieth, RNA Fellow (Mentor: Mindy Larsen),Department of Biological Sciences, University at Albany
Title: Endothelial Cell Response to Salivary Gland Ductal Ligation

Speaker: Markus Landthaler, PhD, Group leader, Max-Delbrück-Centrum für Molekulare Medizin (MDC), Berlin
Title: Posttranscriptional regulation in cellular space and time

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

November 17, 2020

First-year RNA Fellows – Speed Talks Part 2

  • Sara Evke: The epitranscriptomic writer ALKBH8 modulates the response to pharmaceuticals.
  • Mahera Kachwala: Hybridization Chain reaction and CRISPR-Cas systems for disease diagnostics.
  • Raghu Ram Katreddi: Role of Notch signaling in cell fate determination of apical versus basal vomeronasal neurons in the vomeronasal organ.
  • Avinash Londhe: Characterization of regulators of PTP1B oxidation in cells.
  • Luis Perez Almodovar: Raman Spectroscopy and Multivariate Analysis for medical Diagnostics.
  • Dana Woodstock: The Other Master Regulator: Specification of Epithelial Cell Identity by p63.

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

October 20, 2020

First-year RNA Fellows – Speed Talks Part 1

  • Rachel Fay: Characterizing the role of temperature on flavivirus evolution and vector virus interactions.
  • William Gasperi: The impact of Mitochondrial Toxicants on the Epitranscriptome.
  • Christopher Smith: Modified CRISPR technology for and beyond DNA and RNA detection.
  • Ed Zandro Taroc: Genetic identity shift in the vomeronasal organ with the ectopic expression of AP2e.
  • Ryan Treen: Ribosome hibernation in Mycobacterium abscessus
  • Amir Agharezaee: Bio-orthogonal chemistry-based method for fluorescent labelling of ribosomal RNA

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

September 15, 2020

Uncovering a mammalian TAF4b-dependent gene expression program required for fertility

Speaker: Megan Gura, PhD Candidate, Molecular Biology, Cell Biology, & Biochemistry Graduate Program, Brown University

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

November 19, 2019

RNA Fellows Speed Talks

  • Pheonah Badu: RNA-Binding Proteins Regulating Zika Virus Gene Expression
  • Zhixue Bai: Recognition Mechanism in FMN Aptamer via Computer Simulation
  • Rachel Fay: The Impact of Temperature on Viral Evolution
  • May Lee: Epitranscriptome Control of Cellular Senescence and Mitochondrial Reprogramming
  • Nicole Ralbovsky: Single-Molecule Detection Using Surface Enhanced Raman Spectroscopy for Biomedical Diagnostics
  • Priyanka Sehta: IRES-Mediated Translation in Mammalian Cells

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

October 22, 2019

RNA Fellows Speed Talks

  • Tristen Head: “Microfluidic Platform for Integrated Reagant Delivery and In Vivo Imaging”
  • Jesus Frias: “Investigating Small Molecules as a Therapeutic for Myotonic Dystrophy”
  • Ali Ropri: “Global Analysis of Super Enhancers in MCF10A Breast Cancer Progression Series”
  • Anwesha Sarkar: “Deciphering Arsenic Induced Epitranscriptomic Changes in HepG2 Cells”
  • Kahini Sarkar: “Activiation and Repression of Meiotic Program During Drosophila Oogenesis”
  • Ya Ying Zheng: “RNA Modification”

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc., Lexogen

 

November 17, 2015

Speaker: Alicia McCarthy
Title: “A tail of two histone modifiers”

Co-hosts: Marlene Belfort and Prash Rangan

 

October 13, 2015

Speaker: Rachel Cary
Title: “RNA research methods in studying Flaviviridae-host interactions”

 

December 15, 2015

Speaker: Patrick Blatt
Title: “Germline RNA Regulators Shape its Immortality”

Co-Hosts: Malene Belfort and Prash Rangan

 

February 16, 2016

Speaker: Rebecca D’Esposito
Title: “Use of Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS) to elucidate nucleic acid structure”

 

March 15, 2016

Speaker: Neil Robertson
Title: “Novel Single Trigger, Dual-Responsive Magnetic Nanoparticles for the Treatment of Resistant Cancer Phenotypes”

 

April 19, 2016

Speaker: Lauren Cooper
Title: “Self-Targeting by the E.coli CRISPR-Cas System”

Speaker: Marissa Louis
Title: “Using Viruses as a Model System to Study RNA Structure and Function”

 

May 17, 2016

Speaker: Rachel Nelson
Title: “What determines polymerase specificity for RNA vs DNA primers?”

 

November 15, 2016

Speaker: Botros Toro
Title: “Study of Weak Nucleic Acid Interactions using ESI-MS”

Sponsors: Krackeler Scientific, RNA Society, New England BioLabs Inc.

Seminar Activities and Functions List
Seminar Activities and Functions List

Note: RNA Fellows are required to attend the Hudson Valley RNA Club, RNA Fellows Colloquium, RNA Institute Retreat and RNA Symposium.

Activity/FunctionFrequencyDescription
Biology SeminarsMonthlyBroadly-based research presentations by external speakers
BMS-WadsworthMonthlyBroadly-based research presentations by external speakers
Career DayAnnualJoint with Career Services. Invited speakers from different science-based professions (business, government, journalism, law)
Chemistry SeminarsMonthlyBroadly-based research presentations by external speakers
Hudson Valley RNA ClubMonthlyRNA-specific, local/Northeast
Life Sciences Research SymposiumAnnualStudents and post-docs presentations fro the Interdisciplinary Life Sciences Building (Biology, Chemistry, Physics, Psychology)
RNA Fellows ColloquiumMonthlyPresented by RNA Fellows
RNA Institute RetreatAnnual--
RNA SymposiumAnnualRNA-based. Technology workshop plus celebrated speakers
WISC SymposiumAnnualWorkshop for interaction and scientific collaboration - Capital District PIs. Started in 2013 Viruses and other possible elements. 2015 - Neuroscience Development. 2016 - Expanding the Life Sciences Toolkit.

 

Doctoral RNA Training Program Stories

stories
News