Research Collaboration and Excellence
Our modern LEEDS-certified building on UAlbany's uptown campus houses researchers that are making scientific breakthroughs in the broad field of Ribonucleic Acid (RNA). RNA has a multitude of essential biological functions and can be used as a tool for scientific discovery and disease treatment. Research at The RNA Institute is discovering new roles for RNA in biology and chemical processes, and is being developed as a tool for therapeutic advances.
The RNA Institute is more than just a modern research facility, we are a collection of diverse and talented researchers united by a common goal in understanding the role of RNA across different fields, including biology, chemistry, biomedical sciences, physics, and nanobiosciences.
The RNA Institute Labs
- Andam Lab
- Agrawal Laboratory
- Begley Laboratory
- Belfort Lab
- Berglund Lab
- Chen Lab
- Conklin Laboratory
- Curcio Lab
- Dey Lab
- Forni Lab
- Fuchs Lab
- Halvorsen Lab
- Herschkowitz Lab
- Larsen Lab
- Lednev Research Laboratory
- McDonough Laboratory
- Niu Lab
- Pager Lab
- Pata Lab
- PTXL Research Group
- Reddy Lab
- Royzen Lab
- Shekhtman Research Group
- Sheng Lab
- Tenenbaum Lab
- Yigit Lab
Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections
Joshua T. Smith, Elissa M. Eckhardt, Nicole B. Hansel, Tahmineh Rahmani Eliato, Isabella W. Martin & Cheryl P. Andam. BMC Infectious Diseases. June 21, 2021
Shanka Walia, Arun Richard Chandrasekaran, Banani Chakraborty, and Dhiraj Bhatia. ACS Appl. Bio Mater. June 18, 2021
Smith CW, Kachwala MJ, Nandu N, Yigit MV. ACS Synth Biol. June 18, 2021
Dana L. Woodstock, Morgan A. Sammons, and Martin Fischer. Frontiers in Cell and Developmental Biology. June 14, 2021
Lifeng Zhou, Arun Richard Chandrasekaran, Mengwen Yan, Vibhav A. Valsangkar, Jeremy I. Feldblyum, Jia Sheng and Ken Halvorsen. Nanoscale Adv. June 11, 2021
Towards development of a novel screening method for identifying Alzheimer’s disease risk: Raman spectroscopy of blood serum and machine learning
Nicole M. Ralbovsky, Greg S. Fitzgerald, Ewan C. McNay, Igor K. Lednev. Spectrochimica Acta. June 5, 2021
Determining the stages of cellular differentiation using deep ultraviolet resonance Raman spectroscopy
Nicole M. Ralbovsky, Paromita Dey, Bijan K.Dey, Igor K. Lednev. Talanta. May 15, 2021
Nicole M. Ralbovsky, Igor K. Lednev. Applied Spectroscopy. May 14, 2021
Anwesha Sarkar William Gasperi Ulrike Begley Steven Nevins Sabrina M. Huber Peter C. Dedon Thomas J. Begley. WIREs RNA. May 13, 2021
Patrick Blatt, Siu Wah Wong-Deyrup, Alicia McCarthy, Justin Camacho, Miler T. Lee 5, Prashanth Rangan. Current Biology. May 13, 2021
Undergraduate students in research: Accommodating undergraduates in the lab is a mutually beneficial relationship
Chandrasekaran AR. EMBO Rep. May 9, 2021
Arun Richard Chandrasekaran J. Mater. Chem. B, April 26, 2021
Song Mao, Zhihua Chang, Ya Ying Zheng, Alexander Shekhtman, Jia Sheng. Chemistry. April 19, 2021
Raghu Ram Katreddi, Paolo E Forni. Cell Mol Life Sci. April 19, 2021
Jennifer F. Hu, Daniel Yim, Duanduan Ma, Sabrina M. Huber, Nick Davis, Jo Marie Bacusmo, Sidney Vermeulen, Jieliang Zhou, Thomas J. Begley, Michael S. DeMott, Stuart S. Levine, Valérie de Crécy-Lagard, Peter C. Dedon & Bo Cao. Nature Biotechnology. April 15, 2021
A translation control module coordinates germline stem cell differentiation with ribosome biogenesis during Drosophila oogenesis
Elliot T Martin, Patrick Blatt, Elaine Ngyuen, Roni Lahr, Sangeetha Selvam, Hyun Ah M Yoon, Tyler Pocchiari, Shamsi Emtenani, Daria Siekhaus, Andrea Jeanne Berman, Gabriele Fuchs, Prashanth Rangan. BioRxiv. April 04, 2021
Queuine Is a Nutritional Regulator of Entamoeba histolytica Response to Oxidative Stress and a Virulence Attenuator
Shruti Nagaraja, Maggi W Cai, [..], Thomas J Begley, et. al. mBio. March 9, 2021
Waldern JM, Smith D, Piazza CL, Bailey EJ, Schiraldi NJ, Nemati R, Fabris D, Belfort M, Novikova O. Mob DNA. March 7, 2021
Arun Richard Chandrasekara. Matter. March 3, 2021
Shamsi Emtenani, Elliott T Martin, Attila Gyoergy, Julia Bicher, Jakob Wendelin-Genger, Thomas Koecher, Thomas Hurd, Andreas Bergthaler, Prashanth Rangan, Daria E Siekhaus. bioRxiv. February 18, 2021
Nidhi Nandu, Christopher W Smith, Mahera J Kachwala, Mehmet V Yigit. Chembiochem. February 15, 2021
Arun Richard Chandrasekaran. Nature Reviews Chemistry. February 10, 2021
Silencing of the tRNA Modification Enzyme Cdkal1 Effects Functional Insulin Synthesis in NIT-1 Cells: tRNA Lys3 Lacking ms 2- (ms 2 t 6 A 37) is Unable to Establish Sufficient Anticodon:Codon Interactions to Decode the Wobble Codon AAG
Amithi Narendran, Sweta Vangaveti, Srivathsan V Ranganathan, Emily Eruysal, Miranda Craft, Omar Alrifai, Fu Yee Chua, Kathryn Sarachan, Breann Litwa, Sheetal Ramachandran, Paul F Agris. Front Mol Biosci. February 9, 2021
SQ3370 Activates Cytotoxic Drug via Click Chemistry at Tumor and Elicits Sustained Responses in Injected and Non‐Injected Lesions
Sangeetha Srinivasan, Nathan Alexander Yee, Kui Wu, Michael Zakharian, Amir Mahmoodi, Maksim Royzen, José Manuel Mejía Oneto. Advanced Therapeutics. January 20, 2021
Nathan T. Forrest, Javier Vilcapoma, Kristina Alejos, Ken Halvorsen and Arun Richard Chandrasekaran. Biochemistry. January 19, 2021.
Computationally reconstructing cotranscriptional RNA folding pathways from experimental data reveals rearrangement of non-native folding intermediates
Angela M. Yu, Paul M. Gasper, Luyi Cheng, …Venkat Gopalan, Alan A. Chen, Julius B. Lucks. Molecular Cell. January 15, 2021.
Zhong Li, Anil Mathew Tharappel, Jimin Xu, Yuekun Lang, Cathleen M. Green, Jing Zhang, Qishan Lin, Sudha Chaturvedi, Jia Zhou, Marlene Belfort, and Hongmin Li. PNAS. January 12, 2021.
Reprogrammable Gel Electrophoresis Detection Assay Using CRISPR-Cas12a and Hybridization Chain Reaction
Mahera J. Kachwala, Christopher W. Smith, Nidhi Nandu, and Mehmet V. Yigit. Anal. Chem. January 6, 2021
Click Activated Protodrugs Against Cancer Increase the Therapeutic Potential of Chemotherapy through Local Capture and Activation
Kui Wu, Nathan Yee, Sangeetha Srinivasan, Amir Mahmoodi, Michael Zakharian, Jose M. Mejia Oneto, Maksim Royzen
Chemical Science · January 5, 2021
Arun Richard Chandrasekaran, Molly MacIsaac, Javier Vilcapoma, Clinton H. Hansen, Darren Yang, Wesley P. Wong, Ken Halvorsen. Nano Lett. January 4, 2021.
Multiplexed detection and quantification of human antibody response to COVID-19 infection using a plasmon enhanced biosensor platform
Nathaniel C.Cady, Natalya Tokranova, Armond Minor, Nima Nikvand, Klemen Strle, William T. Lee, William Page, Ernest Guignon, Arturo Pilar, George N.Gibson. Biosensors and Bioelectronics. January 1, 2021
Diverse lineages of multidrug resistant clinical Salmonella enterica and a cryptic outbreak in New Hampshire, USA revealed from a year-long genomic surveillance
J.Park, Jinfeng Li, Xinglu Zhang, Fengxiang Gao, Christopher S. Benton, Cheryl P. Andam. Infection, Genetics and Evolution. January, 2021
Tahmineh Rahmani Eliato, Joshua T Smith, Zhen Tian, Eun-Sik Kim, Wonseok Hwang, Cheryl P Andam, Young Jo Kim. J Mater Chem B. January, 2021
Nicole M Ralbovsky, Igor K Lednev. Talanta. January 1, 2021
Nidhi Nandu, Christopher W. Smith, Taha Bilal Uyar, Yu-Sheng Chen, Mahera J. Kachwala, Muhan He, and Mehmet V. Yigit. ACS Appl. Nano Mater. December 14, 2020
Discrimination between human and animal blood by attenuated total reflection Fourier transform-infrared spectroscopy
Ewelina Mistek-Morabito & Igor K. Lednev. Communications Chemistry. December 10, 2020.
Pattamatta A, Nguyen L, Olafson HR, Scotti MM, Laboissonniere LA, Richardson J, Berglund JA, Zu T, Wang ET, Ranum LPW. Hum Mol Genet. December 31, 2020
RNA structure probing to characterize RNA-protein interactions on a low abundance pre-mRNA in living cells
Bubenik JL, Hale M, McConnell O, Wang E, Swanson MS, Spitale R, Berglund JA. RNA. December 11, 2020
Arun Richard Chandrasekaran, Lifeng Zhou and Ken Halvorsen. Nature Biomedical Engineering. December 8, 2020
Udisha Singh, Vinod Morya, Anjali Rajwar, Arun Richard Chandrasekaran, Bhaskar Datta, Chinmay Ghoroi, and Dhiraj Bhatia.
ACS Omega 2020, November 28, 2020
Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex
Phensinee Haruehanroengra, Sweta Vangaveti, Srivathsan V. Ranganathan, Song Mao, Max Daniel Su, Alan A. Chen, Jia Sheng. iScience. November 26, 2020.
MicroRNA-24-3p promotes skeletal muscle differentiation and regeneration by regulating high mobility group AT-hook 1
Paromita Dey, Bijan K. Dey. BioRxiv. November 11, 2020
Determining the stages of cellular differentiation using Deep Ultraviolet Resonance Raman Spectroscopy.
Nicole K Ralbovsky, Paromita Dey, Bijan K Dey, Igor Lednev
bioRxiv · November 08, 2020
Fusheng Shen, Song Mao, Johnsi Mathivanan, Ying Wu, Arun Richard Chandrasekaran, Hehua Liu, Jianhua Gan and Jia Sheng
ACS Omega · October 28, 2020
Jibin Abraham Punnoose, Andrew Hayden, Lifeng Zhou, Ken Halvorsen
Biophysical Journal · October 27, 2020
Anjali Rajwar, Sumit Kharbanda, Arun Richard Chandrasekaran, Sharad Gupta, and Dhiraj Bhatia
ACS Appl. Bio Mater. · October 26, 2020
Arun Richard Chandrasekaran, Johnsi Mathivanan, Parisa Ebrahimi, Javier Vilcapoma, Alan A. Chen, Ken Halvorsen and Jia Sheng
Nanoscale · October 22, 2020
Abou-Elkhair, R.A.I.; Wasfy,A. A.; Mao, S.; Du,J.; Eladl, S.; Metwally, K.; Hassan, A.E.A.; Sheng, J. New J. Chem. October 21, 2020.
Ed Zandro M. Taroc, Raghu Ram Katreddi and Paolo E. Forni
Front. Physiol. · October 21, 2020
Forensic Phenotype Profiling Based on the Attenuated Total Reflection Fourier Transform-Infrared Spectroscopy of Blood: Chronological Age of the Donor
Samantha Giuliano, Ewelina Mistek-Morabito and Igor K. Lednev
ACS Omega · October 14, 2020
Nan Liu, Xiaolong Dong, Cuixia Hu, Jianwei Zeng, Jiawei Wang, Jia Wang, Hong-Wei Wang, Marlene Belfort
Nucleic Acids Research · October 06, 2020
Nidhi Nandu, Christopher W. Smith, Mahera J. Kachwala, Mehmet V. Yigit. ChemBioChem. October 6, 2020
H. Clifton Ray, Bruce A. Corliss, Anthony C. Bruce, Sam Kesting, Paromita Dey, Jennifer Mansour, Scott A. Seaman, Christian M. Smolko, Corbin Mathews, Bijan K. Dey, Gary K. Owens, Shayn M. Peirce & Paul A. Yates
Scientific Reports · September 25, 2020
Arun Richard Chandrasekaran, Molly MacIsaac, Javier Vilcapoma, Clinton H Hansen, Darren Yang, Wesley P Wong, Ken Halvorsen
BioRxiv · September 22, 2020
Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA.
Mao S, Sekula B, Ruszkowski M, Ranganathan SV, Haruehanroengra P, Wu Y, Shen F, Sheng J.
Nucleic Acids Research · September 17, 2020
Arun Richard Chandrasekaran and Ken Halvorsen
Current Protocols · September 15, 2020
Multiplexed Detection and Quantification of Human Antibody Response to COVID-19 Infection Using a Plasmon Enhanced Biosensor Platform
Nathaniel C Cady, Natalya Tokranova, Armond Minor, Nima Nikvand, Klemen Strle, William T Lee, William Page, Ernest Guignon, Arturo Pilar, George N Gibson
BioRxiv · September 02, 2020
Synthesis of 5-Cyanomethyluridine (cnm 5 U) and 5-Cyanouridine (cn 5 U) Phosphoramidites and Their Incorporation into RNA Oligonucleotides
Mao S, Tsai HC, Sheng J.
Curr Protoc Nucleic Acid Chem. · September 01, 2020
Wu Y, Zheng YY, Lin Q, Sheng J.
Curr Protoc Nucleic Acid Chem. · September 01, 2020
Mao, S.; Haruehanroengra, P.; Ranganathan, S.V.; Shen, F.; Begley, T.; Sheng, J. ACS Chemical Biology, August 28, 2020, in press.
Lifeng Zhou, Arun Richard Chandrasekaran, Jibin Abraham Punnoose, Gaston Bonenfant, Stephon Charles, Oksana Levchenko, Pheonah Badu, Cassandra Cavaliere, Cara T. Pager and Ken Halvorsen
Science Advances · August 21, 2020
Morgan A Sammons, Thuy-Ai T Nguyen, Simon S McDade, Martin Fischer
Nucleic Acids Research · August 14, 2020
Arun Richard Chandrasekara, Ruju Trivedi, Ken Halvorsen.
Cell Reports. Physical Science · July 22, 2020
Clare M. Miller, Sangeetha Selvam, Gabriele Fuchs.
WiresRNA · July 12, 2020
Diagnosis of a model of Duchenne muscular dystrophy in blood serum of mdx mice using Raman hyperspectroscopy.
Nicole M. Ralbovsky, Paromita Dey, Andrew Galfano, Bijan K. Dey, Igor K. Lednev
Nature Scientific Reports · July 16, 2020
Daniel Woods, Sweta Vangaveti, Ikechukwu Egbanum, Allison M. Sweeney, Zhong Li, Valjean Bacot-Davis, Danielle S. LeSassier, Matthew Stanger, Gabrielle E. Hardison, Hongmin Li, Marlene Belfort, Christopher W. Lennon
American Society for Microbiology · July 14, 2020
Jibin A Punnoose, Andrew Hayden, Lifeng Zhou, Ken Halvorsen.
bioRxiv Preprint · July 07, 2020
Lifeng Zhou, Cassandra Cavaliere, Andrew Hayden, Paromita Dey, Song Mao, Arun Richard Chandrasekaran, Jia Sheng, Bijan K Dey, Ken Halvorsen
bioRxiv · July 07, 2020
Long noncoding RNA BHLHE40‐AS1 promotes early breast cancer progression through modulating IL‐6/STAT3 signaling
Rebecca S. DeVaux, Ali S. Ropri, Sandra L. Grimm, Peter A. Hall, Emilio O. Herrera, Sridar V. Chittur, William P. Smith, Cristian Coarfa, Fariba Behbod, Jason I. Herschkowitz
Journal of Cellular Biochemistry · July 01, 2020
Patrick Blatt, Siu Wah Wong-Deyrup, Alicia McCarthy, Shane Breznak, Matthew D. Hurton, Maitreyi Upadhyay, Benjamin Bennink, Justin Camacho, Miler T. Lee, Prashanth Rangan
bioRxiv · June 30, 2020
Arun Richard Chandrasekaran
ACS Synth. Biol · June 25, 2020
Aldema Sas-Chen, Justin M. Thomas, […], Qishan Lin, Schraga Schwartz
Nature · June 17, 2020
Tuan M Nguyen, Sumayya Alchalabi, Adewunmi Oluwatoyosi, Ali S Ropri, Jason I Herschkowitz, Jeffrey M Rosen.
RNA Biol. · June 10, 2020
Ngo VA, Sarkar S, Neale C, Garcia AE
J Phys Chem B. · June 08, 2020
James A Gregory, Emily Hoelzli, Rawan Abdelaal, Catherine Braine, Miguel Cuevas, Madeline Halpern, Natalie Barretto, Nadine Schrode, Güney Akbalik, Kristy Kang, Esther Cheng, Kathryn Bowles, Steven Lotz, Susan Goderie, Celeste M Karch, Sally Temple, Alison Goate, Kristen J Brennand, Hemali Phatnani
Cells. · June 05, 2020
Zheng X, Fu Z, Su D, Zhang Y, Li M, Pan Y, Li H, Li S, Grassucci RA, Ren Z, Hu Z, Li X, Zhou M, Li G, Frank J, Yang J.
Nat Struct Mol Biol. · June 01, 2020
Ethan LaFontaine, Clare M. Miller, Natasha Permaul, Elliot T. Martin, Gabriele Fuchs
Virology · June 01, 2020
SNAP/CLIP-Tags and Strain-Promoted Azide–Alkyne Cycloaddition (SPAAC)/Inverse Electron Demand Diels–Alder (IEDDA) for Intracellular Orthogonal/Bioorthogonal Labeling
Miguel Macias-Contreras , Huan He, Kevin N. Little, Justin P. Lee, Ryan P. Campbell, Maksim Royzen, and Lei Zhu
Bioconjugate Chem. · May 31, 2020
Lorenzo Baronti, Ileana Guzzetti, Parisa Ebrahimi, Sarah Friebe Sandoz, Emilie Steiner, Judith Schlagnitweit, Bastian Fromm, Luis Silva, Carolina Fontana, Alan A. Chen and Katja Petzold
Nature · May 27, 2020
Muhan He, Nidhi Nandu, Taha Bilal Uyar, Maksim Royzen and Mehmet V. Yigit
Chemical Communications · May 26, 2020
Sex-dependent effects of chronic variable stress on discrete corticotropin-releasing factor receptor 1 cell populations.
Rosinger ZJ, De Guzman RM, Jacobskind JS, Saglimbeni B, Malone M, Fico D, Justice NJ, Forni PE, Zuloaga DG
.Physiol Behav. · May 15, 2020
Reaction mechanism, energetics, and kinetics of the water-assisted thioformaldehyde + ˙OH reaction and the fate of its product radical under tropospheric conditions.
Arathala P, Katz M, Musah RA
Phys Chem Chem Phys. · May 13, 2020
Jaremko W, Huang Z, Karl N, Pierce VD, Lynch J, Niu L.
J Biol Chem. · May 08, 2020
Specificity in the Biosynthesis of the Universal tRNA Nucleoside N6-Threonylcarbamoyl Adenosine (t6A) - TsaD is the Gatekeeper.
Swinehart WE, Deutsch CW, Sarachan KL, Luthra A, Bacusmo JM, de Crécy-Lagard V, Swairjo MA, Agris PF, Iwata-Reuyl D.
RNA · May 08, 2020
Xiaolong Dong, Guosheng Qu, Carol Lyn Piazza, Marlene Belfort
Nucleic Acids Research · May 07, 2020
Asian Zika Virus Isolate Significantly Changes the Transcriptional Profile and Alternative RNA Splicing Events in a Neuroblastoma Cell Line
Gaston Bonenfant, Ryan Meng, Carl Shotwell, Pheonah Badu, Anne F. Payne, Alexander T. Ciota, Morgan A. Sammons, J. Andrew Berglund, Cara T. Pager.
Viruses · May 05, 2020
Tunable Transcriptional Interference at the Endogenous Alcohol Dehydrogenase Gene Locus in Drosophila melanogaster
Victoria Jorgensen, Jingxun Chen, Helen Vander Wende, Devon E Harris, Alicia McCarthy, Shane Breznak, Siu Wah Wong-Deyrup, Yuzhang Chen, Prashanth Rangan , Gloria Ann Brar, Eric M Sawyer, Leon Y Chan, Elçin Ünal
G3: GENES, GENOMES, GENETICS · May 04, 2020
Netzband R, Pager CT.
Wiley Interdiscip Rev RNA. · May 01, 2020
Smad4-dependent morphogenic signals control the maturation and axonal targeting of basal vomeronasal sensory neurons to the accessory olfactory bulb
Naik AS, Lin JM, Taroc EZM, Katreddi RR, Frias JA, Lemus AA, Sammons MA, Forni PE.
Development · April 27, 2020
Smith CW, Nandu N, Kachwala MJ, Chen YS, Uyar TB, Yigit MV.
Biochemistry · April 21, 2020
The epitranscriptomic writer ALKBH8 drives tolerance and protects mouse lungs from the environmental pollutant naphthalene
Leonardi A, Kovalchuk N, Yin L, Endres L, Evke S, Nevins S, Martin S, Dedon PC, Melendez JA, Van Winkle L, Zhang QY, Ding X, Begley TJ.
Epigenetics · April 17, 2020
Epigenomic and Transcriptomic Changes During Human RPE EMT in a Stem Cell Model of Epiretinal Membrane Pathogenesis and Prevention by Nicotinamide
Nathan C Boles, Marie Fernandes, Tomasz Swigut, Rajini Srinivasan, Lauren Schiff, Alvaro Rada-Iglesias, Qingjie Wang, Janmeet S Saini, Thomas Kiehl, Jeffrey H Stern, Joanna Wysocka, Timothy A Blenkinsop, Sally Temple
Stem Cell Reports. · April 14, 2020
Ying Wu, Yaning Tang, Xiaolong Dong, Ya Ying Zheng, Phensinee Haruehanroengra, Song Mao, Qishan Lin, Jia Sheng
ACS Chem. Biol. · April 10, 2020
DNA Nanotechnology in the Undergraduate Laboratory: Analysis of Molecular Topology Using DNA Nanoswitches
Jibin Abraham Punnoose, Ken Halvorsen, Arun Richard Chandrasekaran
Journal of Chemical Education · April 10, 2020
Prasad Bandarkar, Huan Yang, Robert Y Henley, Meni Wanunu, Paul C Whitford
Biophys J. · April 07, 2020
Ivan Ting Hin Fung, Poornima Sankar, Yuanyue Zhang, Lisa S Robison, Xiuli Zhao, Shanti S D'Souza, Abigail E Salinero, Yue Wang, Jiang Qian, Marcy L Kuentzel, Sridar V Chittur, Sally Temple, Kristen L Zuloaga, Qi Yang
J Exp Med. · April 06, 2020
Uyar TB, Wu K, He M, Khan I, Royzen M, Yigit MV.
ChemMedChem · March 26, 2020
Exceptional Nuclease Resistance of Paranemic Crossover (PX) DNA and Crossover-Dependent Biostability of DNA Motifs
Arun Richard Chandrasekaran, Javier Vilcapoma, Paromita Dey, Siu Wah Wong-Deyrup, Bijan K. Dey, Ken Halvorsen
J. Am. Chem. Soc. · March 25, 2020
Polycysteine-encoding leaderless short ORFs function as cysteine-responsive attenuators of operonic gene expression in mycobacteria.
Canestrari JG, Lasek-Nesselquist E, Upadhyay A, Rofaeil M, Champion MM, Wade JT, Derbyshire KM, Gray TA.
Mol Microbiol. · March 17, 2020
A Dual-Functioning 5'-PPP-NS1shRNA That Activates a RIG-I Antiviral Pathway and Suppresses Influenza NS1
Neetu Singh, Priya Ranjan, Weiping Cao, Jenish Patel, Shivaprakash Gangappa, Bruce A Davidson, John M Sullivan, Paras N Prasad, Paul R Knight, Suryaprakash Sambhara
Mol Ther Nucleic Acids. · March 06, 2020
Waldern J, Schiraldi NJ, Belfort M, Novikova O.
Mol Biol Evol · March 05, 2020
Allison N Catizone, Gizem Karsli Uzunbas, Petra Celadova, Sylvia Kuang, Daniel Bose, Morgan A Sammons
Nucleic Acids Research · March 05, 2020
Chandrasekaran AR, Dey BK, Halvorsen K.
Curr Protoc Mol Biol. · March 01, 2020
Identification of the Species Constituents of Maggot Populations Feeding on Decomposing Remains Facilitation of the Determination of Post Mortem Interval and Time Since Tissue Infestation through Application of Machine Learning and Direct Analysis in Real Time-Mass Spectrometry.
Samira Beyramysoltan, Mónica I. Ventura, Jennifer Y. Rosati, Justine E. Giffen-Lemieux and Rabi A. Musah
Anal. Chem. · February 24, 2020
Nucleobase-Modified Triplex-Forming Peptide Nucleic Acids for Sequence-Specific Recognition of Double-Stranded RNA
Nikita Brodyagin, Dziyana Hnedzko, James A MacKay, Eriks Rozners
Peptide Nucleic Acids · February 23, 2020
Haley S Caldwell, Kiet Ngo, Janice D Pata, Laura D Kramer, Alexander T Ciota
J Gen Virol. · February 18, 2020
A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine.
Vangaveti S, Cantara WA, Spears JL, DeMirci H, Murphy FV 4th, Ranganathan SV, Sarachan KL, Agris PF.
J Mol Biol. · February 14, 2020
2'-O-ribose Methylation of Transfer RNA Promotes Recovery From Oxidative Stress in Saccharomyces Cerevisiae
Lauren Endres ,Rebecca E. Rose,Frank Doyle,Taylor Rahn,Bethany Lee,Jessica Seaman,William D. McIntyre,Daniele Fabris
PLoS One. · February 13, 2020
Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast.
Leticia Pollo-Oliveira, Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Martinelli, Michael S DeMott, Thomas J Begley, Peter C Dedon, Raffael Schaffrath, Valérie de Crécy-Lagard
Biomolecules · February 10, 2020
Lisa Ngu, Jenifer N Winters, Kien Nguyen, Kevin E Ramos, Nicholas A DeLateur, Lee Makowski, Paul C Whitford, Mary Jo Ondrechen, Penny J Beuning
PLoS One. · February 06, 2020
Reddy K, Cleary JD, Berglund JA
Trends Pharmacol Sci. · February 04, 2020
Small RNA Mcr11 Requires the Transcription Factor AbmR for Stable Expression and Regulates Genes Involved in the Central Metabolism of Mycobacterium Tuberculosis
Roxie C. Girardin Kathleen A. McDonough
Mol Microbiol. · February 03, 2020
High‐resolution ion mobility spectrometry‐mass spectrometry of isomeric/isobaric ribonucleotide variants
Thomas Kenderdine Reza Nemati Andrew Baker Martin Palmer Jakub Ujma Molly FitzGibbon Limin Deng Maksim Royzen James Langridge Daniele Fabris
Journal of Mass Spectrometry · February 03, 2020
Comparisons of SOCS mRNA and protein levels in Xenopus provide insights into optic nerve regenerative success
Priscilla R, Szaro BG.
Brain Research · February 01, 2020
Reddy K, Cleary JD, Berglund JA.
Trends Pharmacol Sci. · February 01, 2020
NDAT Suppresses Pro-Inflammatory Gene Expression to Enhance Resveratrol-Induced Anti-Proliferation in Oral Cancer Cells
Yih Ho, Chien-Yi Wu, Yu-Tang Chin, Zi-Lin Li, Yi-Shin Pan, Tung-Yung Huang, Po-Yu Su, Sheng-Yang Lee, Dana R Crawford, et. al.
Food Chem Toxicol. · February 01, 2020
Fikiet MA, Tuschel D, Ermolenkov VV, Lednev IK.
Appl Spectrosc. · February 01, 2020
Loss of epitranscriptomic control of selenocysteine utilization engages senescence and mitochondrial reprogramming
Lee MY, Leonardi A, Begley TJ, Melendez JA.
Redox Biol. · January 28, 2020
Synthesis and Biological Activity of Short Interfering RNAs Having Several Consecutive Amide Internucleoside Linkages
Venubabu Kotikam, Julien A Viel, Eriks Rozners
Chemistry · January 13, 2020
Shotwell CR, Cleary JD, Berglund JA.
Wiley Interdiscip Rev RNA. · January 11, 2020
Gli3 Regulates Vomeronasal Neurogenesis, Olfactory Ensheathing Cell Formation, and GnRH-1 Neuronal Migration
Taroc EZM, Naik AS, Lin JM, Peterson NB, Keefe DL Jr, Genis E, Fuchs G, Balasubramanian R, Forni PE.
J Neurosci. · January 08, 2020
O'Keefe KJ, DeSantis KA, Altrieth AL, Nelson DA, Taroc EZM, Stabell AR, Pham MT, Larsen M.
J Dent Res. · January 01, 2020
PoojaFlora12Siu WahWong-Deyrup1, Elliot, ToddMartin1, RyanJ.Palumbo13, MohamadNasrallah14, AndrewOligney15, PatrickBlatt1, DhruvPatel16, GabrieleFuchs1, PrashanthRangan17
Cell Reports · December 26, 2019
Hale MA, Johnson NE, Berglund JA.
Biochim Biophys Acta Gene Regul Mech · December 01, 2019
Xiao M, Lai W, Man T, Chang B, Li L, Chandrasekaran AR, Pei H.
Chem Rev. · November 27, 2019
Chandrasekaran AR, Punnoose JA, Zhou L, Dey P, Dey BK, Halvorsen K.
Nucleic Acids Res. · November 18, 2019
Antonio B Oliveira Jr, Huan Yang, Paul C Whitford, Vitor B P Leite
J Chem Theory Comput. · November 12, 2019
Netzband R, Pager CT.
Wiley Interdiscip Rev RNA. · November 06, 2019
Epitranscriptomic systems regulate the translation of reactive oxygen species detoxifying and disease linked selenoproteins
Leonardi A, Evke S, Lee M, Melendez JA, Begley TJ
Free Radic Biol Med · November 01, 2019
Synthesis and RNA-Binding Properties of Extended Nucleobases for Triplex-Forming Peptide Nucleic Acids
Ilze Kumpina, Nikita Brodyagin, James A MacKay, Scott D Kennedy, Martins Katkevics, Eriks Rozners
J Org Chem. · November 01, 2019
Zoran Ilic, Abhinav R Saxena, Sivakumar Periasamy, Dana R Crawford
Free Radic Biol Med. · November 01, 2019
Leptin-derived peptides block leptin-induced proliferation by reducing expression of pro-inflammatory genes in hepatocellular carcinoma cells
Yih Ho, Shwu-Huey Wang, Yi-Ru Chen, Zi-Lin Li, Yu-Tang Chin, Yu-Chen S H Yang, Yun-Hsuan Wu, Kuan-Wei Su, Hung-Ru Chu, Hsien-Chung Chiu, Dana R Crawford, et. al.
Food Chem Toxicol · November 01, 2019
Kramer LD, Ciota AT, Kilpatrick AM.
J Med Entomol. · October 28, 2019
A CTG repeat-selective chemical screen identifies microtubule inhibitors as selective modulators of toxic CUG RNA levels
Reddy K, Jenquin JR, McConnell OL, Cleary JD, Richardson JI, Pinto BS, Haerle MC, Delgado E, Planco L, Nakamori M, Wang ET, Berglund JA.
Proc Natl Acad Sci U S A · October 15, 2019
Green CM, Li Z, Smith AD, Novikova O, Bacot-Davis VR, Gao F, Hu S, Banavali NK, Thiele DJ, Li H, Belfort M
PLoS Biol · October 10, 2019
Avanzino BC, Jue H, Miller CM, Cheung E, Fuchs G, Fraser CS
The Journal of Biological Chemistry · October 05, 2019
Drift-diffusion (DrDiff) Framework Determines Kinetics and Thermodynamics of Two-State Folding Trajectory and Tunes Diffusion Models
Frederico Campos Freitas, Angelica Nakagawa Lima, Vinícius de Godoi Contessoto, Paul C Whitford, Ronaldo Junio de Oliveira
J Chem Phys. · September 21, 2019
A Novel Two-Step Method for the Detection of Organic Gunshot Residue for Forensic Purposes: Fast Fluorescence Imaging Followed by Raman Microspectroscopic Identification
Khandasammy SR, Rzhevskii A, Lednev IK.
Anal Chem. · September 17, 2019
Trends Biochem Sci. · September 01, 2019
Huan Yang, Prasad Bandarkar, Ransom Horne, Vitor B P Leite, Jorge Chahine, Paul C Whitford
J Chem Phys. · August 28, 2019
Bio-orthogonal chemistry-based method for fluorescent labelling of ribosomal RNA in live mammalian cells
Wu K, He M, Khan I, Asare Okai PN, Lin Q, Fuchs G, Royzen M.
Chem Commun (Camb). · August 27, 2019
Mubaid S, Ma JF, Omer A, Ashour K, Lian XJ, Sanchez BJ, Robinson S, Cammas A, Dormoy-Raclet V, Di Marco S, Chittur SV, Tenenbaum SA, Gallouzi IE.
Proc Natl Acad Sci U S A. · August 27, 2019
Almehmadi LM, Curley SM, Tokranova NA, Tenenbaum SA, Lednev IK.
Sci Rep. · August 26, 2019
Valsangkar VA, Chandrasekaran AR, Zhuo L, Mao S, Lee GW, Kizer M, Wang X, Halvorsen K, Sheng J.
Chem Commun (Camb). · August 21, 2019
Reddy K, Jenquin JR, Cleary JD, Berglund JA.
Int J Mol Sci. · August 17, 2019
Combination Treatment of Erythromycin and Furamidine Provides Additive and Synergistic Rescue of Mis-Splicing in Myotonic Dystrophy Type 1 Models
Jenquin JR, Yang H, Huigens RW 3rd, Nakamori M, Berglund JA.
ACS Pharmacol Transl Sci. · August 09, 2019
Lennon CW, Stanger MJ, Belfort M
Biochemistry · August 06, 2019
Ralbovsky NM, Lednev IK.
Spectrochim Acta A Mol Biomol Spectrosc. · August 05, 2019
Li Z, Fu B, Green CM, Liu B, Zhang J, Lang Y, Chaturvedi S, Belfort M, Liao G, Li H.
Emerg Microbes Infect. · August 01, 2019
Elliott BA, Ho HT, Ranganathan SV, Vangaveti S, Ilkayeva O, Abou Assi H, Choi AK, Agris PF, Holley CL.
Nat Commun. · July 30, 2019
Tardu M, Jones JD, Kennedy RT, Lin Q, Koutmou KS.
ACS Chem Biol. · July 19, 2019
Hale MA, Johnson NE, Berglund JA.
Biochim Biophys Acta Gene Regul Mech. · July 16, 2019
Masking the Peroxidase‐Like Activity of the Molybdenum Disulfide Nanozyme Enables Label‐Free Lipase Detection
Nidhi Nandu Mustafa Salih Hizir Neil M. Roberston Dr. Birol Ozturk Prof. Dr. Mehmet V. Yigit
Chem Bio Chem. · July 15, 2019
Beth L Worley, Yeon Soo Kim, Jennifer Mardini, Rameez Zaman, Kelly E Leon, Piyushi Gupta Vallur, Asvelt Nduwumwami, Joshua I Warrick, Patrick F Timmins, Joshua P Kesterson, Rébécca Phaëton, Nam Y Lee, Vonn Walter, Lauren Endres, Karthikeyan Mythreye, Katherine M Aird, Nadine Hempel
Redox Biol. · July 01, 2019