Michael J. Boucher

Assistant Professor
College of Integrated Health Sciences
Department of Biomedical Sciences
Michael J. Boucher.
Education

PhD, Microbiology & Immunology, Stanford University, 2019

Postdoctoral Training, Department of Biochemistry & Biophysics, University of California, San Francisco

About

The Boucher Laboratory at the Wadsworth Center

Human fungal infections cause 2.5 million annual deaths yet remain neglected diseases. Our lab studies pathogens in the genus Cryptococcus, which are environmental fungi found in diverse ecological settings worldwide. Cryptococcus neoformans, the most prominent pathogen in this group, is an opportunistic yeast that causes life-threatening meningitis and is responsible for 19% of global HIV/AIDS deaths. Members of the Cryptococcus gattii species complex are related fungi of significant concern due to their ability to infect immunocompetent individuals. Our research aims to understand the unique biology of these fungi, with the long-term goal of developing new treatment and prevention strategies.

Genetic tools to study fungal pathogens

Advances in fungal genetics have laid the groundwork for rapid progress in dissecting fungal pathogenesis, yet there are numerous opportunities to expand this toolbox. A major goal is to develop and implement new methods that will open previously intractable biological questions.

Systematic functionalization of novel fungal genes

How do we study uncharacterized genes in divergent organisms? Cryptococcus species are members of the phylum Basidiomycota, which diverged from model fungi in the phylum Ascomycota (e.g., Saccharomyces cerevisiae) at least 450 million years ago. More than 1 in 5 C. neoformans genes lack readily identifiable orthologs outside of the basidiomycetes, making this species a valuable system to explore the diversity of eukaryotic gene function. Paradoxically, C. neoformans is also a powerful model for exploring conserved biology, as it retains cellular pathways that have been lost from traditional model yeasts yet are otherwise found broadly across the eukaryotic tree of life. Our lab uses high-throughput genetics and systems biology approaches to define cryptococcal gene function in an unbiased fashion, allowing us to study both unique pathogen adaptations and fundamental eukaryotic biology.

Research

Publications

Learn more about Michael J. Boucher's publications.

Boucher MJ, Banerjee S, Joshi MB, Wei AL, Nalley MJ, Huang MY, Lei S, Ciranni M, Condon A, Langen A, Goddard TD, Caradonna I, Goranov AI, Homer CM, Mortensen Y, Petnic S, Reilly MC, Xiong Y, Susa KJ, Pastore VP, Zaro BW, Madhani HD. Phenotypic landscape of an invasive fungal pathogen reveals its unique biology. Cell. 2025; 188 (15): 4003-4024.e24. DOI: 10.1016/j.cell.2025.05.017

Boucher MJ, Madhani HD. CRISPR/Cas9-compatible plasmids enabling seven dominant genetic selection methods for the human fungal pathogen Cryptococcus neoformans. Microbiol Spectr. 2025; Nov 4;13 (11): e0193525. DOI: 10.1128/spectrum.01935-25

Boucher MJ, Madhani HD. Convergent evolution of innate immune-modulating effectors in invasive fungal pathogens. Trends Microbiol. 2024; May;32 (5): 435-447. DOI: 10.1016/j.tim.2023.10.011

Huang MY, Joshi MB, Boucher MJ, Lee S, Loza LC, Gaylord EA, Doering TL, Madhani HD. Short homology-directed repair using optimized Cas9 in the pathogen Cryptococcus neoformans enables rapid gene deletion and tagging. Genetics. 2022; Jan 4;220 (1): iyab180. DOI: 10.1093/genetics/iyab180