Useful Links
Manuals
Here are some of the frequently used manuals used by the microarray core:
- Affymetrix 500K SNP array protocol - Affy 500k Assay Manual
- Affymetrix Genechip expression array protocol - Affy Expression Protocol
- Affymetrix Whole Transcript sense target labeling assay manual - Affy WT sensetarget label manual
- Agilent hybridization chamber user manual - Agilent hyb chamber user guide 00061330
- Agilent bioanalyzer user's guide - Bioanalyzer 2100 user guide
- Agilent bioanalyzer maintenance and troubleshooting guide - Bioanalyzer 2100 Maintenance and Troubleshooting
- Affymetrix enzo Small Sample Target Labeling Assay - Enzo
- Eppendorf DualChip indirect labeling protocol - Eppendorf DualChip V3 indirect
- Eppendorf DualChip silver labeling protocol - Eppendorf DualChip V3 Silver
- Nanodrop 1000 user manual - Nanodrop 1000 users manual
- Qiagen Tissuelyser Handbook - TissueLyser Handbook
- Qiagen Tissuelyser Operating Manual - Tissuelyser operating manual
- Vector NTI user manual - VectorNTI v.10 users manual
Overview and Reference Sites:
- http://www.nslij-genetics.org/microarray/core.html
- http://www.nslij-genetics.org/microarray/
- http://info.med.yale.edu/wmkeck/affymetrix/analysis.htm
- http://www.bsi.vt.edu/ralscher/gridit/
- http://www.gene-chips.com/
- http://www.nhgri.nih.gov/DIR/Microarray/main.html
- http://ihome.cuhk.edu.hk/~b400559/array.html
Resources:
- http://stress-genomics.org/stress.fls/expression/array_tech/trouble_shooting/troubles_index.htm
- http://www.chip.org/chip2003/
- http://www.ebi.ac.uk/microarray/
- http://cmgm.stanford.edu/pbrown/mguide/index.html
- http://www.microarrays.org/
- http://www.mcb.arizona.edu/wardlab/microarray.html
- http://oz.berkeley.edu/users/terry/zarray/Html/
- http://biosun1.harvard.edu/complab/
Limited list of vendors of microarray related products
Limited list of vendors and academic providers of microarray analysis software
- Silicon Genetics (GeneSpring)
- BioDiscovery (Imagene and Genesight)
- Affymetrix (Microarray analysis suite and Data Mining Tools)
- Rosetta (Rosetta Resolver)
- The Institute for Genomic Research
- WingWong at Harvard (dChip)
- Speed lab