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- S.A. Tishkoff, M.K. Gonder, B.M. Henn, H. Mortensen, N. Fernandopulle, C. Gignoux, A. Knight, P.A. Underhill, U. Ramakrishnan, F.A. Reed and J.L. Mountain. History of Click-Speaking Populations of Africa Inferred from mtDNA and Y Chromosome Genetic Variation. Molecular Biology and Evolution, 2007 published online ahead of print.
- M. K. Gonder, H. M. Mortensen, F. A. Reed, A. de Sousa, and S. A. Tishkoff. Whole mtDNA genome sequence analysis of ancient African lineages. Molecular Biology and Evolution, 24, 2007, pp. 757-768. PDF
- S.A. Tishkoff and M.K. Gonder. Human origins within and out of Africa. Anthropological Genetics: Theory Methods and Applications, M. Crawford, ed, Cambridge University Press, 2006, pp. 337-379.
- M. K. Gonder, T.R. Disotell, and J.F. Oates. New genetic evidence on the evolution of chimpanzee populations, and implications for taxonomy. International Journal of Primatology, vol. 27 (4), 2006, pp. 1103-1127. PDF
- J. Wang, L. Song, M. K. Gonder, S. A. Tishkoff, S. Azrak, D.A. Ray, M. Batzer and P. Liang. Intra-species genome comparison reveals 800 polymorphic Alus and a dynamic Alu distribution in the human genome. Gene, vol. 365, 2006, pp. 11-20. PDF
- M. K. Gonder and T. R. Disotell. Contrasting phylogeographic histories of chimpanzees in Nigeria and Cameroon: A multilocus analysis. Primate Biogeography, eds. Lehman and Fleagle. New York: Plenum/Kluwer Press, 2006, pp. 129-159.
- Nigeria. J. Oates, L. Gadsby, P. Jenkins, M.K. Gonder, C. Bocian and A. Adeleke. West African chimpanzees: status survey and conservation action plan, IUCN/SSC Primate Specialist Group, and IUCN--The World Conservation Union eds. R. Kormos C. Boesch, M.I. Bakarr and T. M Butynski, Gland, Switzerland: IUCN, 2003, pp. 123-130.
- P. Gagneux, M.K. Gonder, T.L. Goldberg and P.A. Morin. Gene flow in wild chimpanzee populations: What genetic data tell us about chimpanzee movement over time and space. Philosophical Transactions of the Royal Society of London, vol. 356, 2001, pp. 889-897. PDF
- M.K. Gonder. Evolutionary Genetics of Chimpanzees (Pan troglodytes) in Nigeria and Cameroon. Ph.D. Dissertation, City University of New York, New York, 2000.
- M.K. Gonder, J.F. Oates, T.R. Disotell, M. Forstner, J.C. Morales and D.J. Melnick. A new west African chimpanzee subspecies? Nature, vol. 388, 24 July 1997, p.337. PDF
- B.P. Wheatley, D.K.H. Putra and M.K. Gonder. A comparison of wild and food-enhanced long-tailed macaques (Macaca fascicularis). Evolution and Ecology of Macaque Societies, eds. E. Fa and D. Lindberg, Cambridge University Press, 1996, pp. 182-206.
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