Molecular Dynamics Simulations of Environment and Sequence Dependent
DNA Conformations: The Development of the BMS Nucleic Acid Force Field and
Comparison with Experimental Results
David R. Langley 487-509
Molecular Dynamics Simulations on Parallel and Antiparallel C.G*G Triplexes
M. Ravi Kiran and Manju
Bansal 511-526
Molecular Mechanics Calculations on a Triple Stranded DNA Involving C+.G-T
and T.A+-C Mismatched Base Triples
Sukesh R. Bhaumik, Kandala
V.R. Chary and Girjesh Govil 527-534
A Model for Parallel Triple Helix Formation by RecA: Single-Strand Association
with a Homologous Duplex via the Minor Groove
Guillaume Bertucat,
Richard Lavery and Chantal Prévost 535-546
The Solution Conformation of a Carbocyclic Analog of the Dickerson-Drew
Dodecamer: Comparison with its Own X-Ray Structure and that of the NMR Structure
of the Native Counterpart
Aleksej Yu. Denisov,
E.V. Zamaratski, Tatiana V. Maltseva, Anders Sandström, Somer Bekiroglu,
Karl-Heinz Altmann, Martin Egli and Jyoti Chattopadhyaya 547-568
The Residence Time of the Bound Water in the Hydrophobic Minor Groove
of the Carbocyclic-Nucleoside Analogs of Dickerson-Drew Dodecamers
T. V. Maltseva, K.-H.
Altmann, M. Egli and J. Chattopadhyaya 569-578
Molecular Dynamics Simulations of DNA in Solution with Different Counter-ions
A.P. Lyubartsev and
A. Laaksonen 579-592
Modeling the Mechanics of a DNA Oligomer
Anne Lebrun and Richard
Lavery 593-604
DNA Curvature and Phosphate Neutralization: An Important Aspect of Specific
Protein Binding
Raphael Gurlie and Krystyna
Zakrzewska 605-618
Nitrogen-15 Chemical Shifts in AT (Adenine-Thymine) and CG (Cytosine-Guanine)
Nucleic Acid Base Pairs
Julio C. Facelli 619-629
Sequence-Dependent Binding of Metal Ion to DNA Oligomeres. A Comparison
of Molecular Electrostatic Potentials with NMR Data
Michael Montrel, Vasily
P. Chuprina, Valery I. Poltev, Willy Nerdel and Einar Sletten 631-637
An NMR Study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) Showing Hydration Water
Molecules in the Minor Groove of a TpA Step
S. Lepore, O. Mauffret,
S. El Antri, O. Convert, E. Lescot, G. Tevanian and D. Fermandjian 639-649
The Biological Implications of Damage to DNA Incorporating an 8-Oxodeoxyguanine:
Cytosine Basepair
Alex Ninabar and Julia
M. Goodfellow 651-661
Terminal Twist Induced Continuous Writhe of a Circular Rod with Intrinsic
Curvature
Hong Qian and James
White 663-669
Continuum Solvent Studies of the Stability of RNA Hairpin Loops and Helices
Jayashree Srinivasan,
Jennifer Miller, Peter A. Kollman and David A. Case 671-682
Structural Model of the HIV-1 Tat(46-58)-TAR Complex
Michael J. Seewald,
Armin U. Metzger, Dieter Willbond, Paul Rösch and Heinrich Sticht 683-692
Hydration of RNA Base Pairs
Pascal Auffinger and
Eric Westhof 693-707
To Knot or Not to Knot? Examination of 16S Ribosomal RNA Models
Margaret S. VanLoock,
Brett A. Harris and Stephen C. Harvey 709-713
Modeling of Angiogenin - 3'-NMP Complex
M.S. Madhusudhan and
Saraswathi Vishveshwara 715-722
Computer Simulation Studies of the Fully Solvated Wild-Type and Mutated
GnRH in Extended and Beta-turn Conformations
Mihaly Mezei and Frank
Guarnieri 723-732
Brownian and Essential Dynamics Studies of the HIV-1 Integrase Catalytic
Domain
Wolfgang Weber, Hagop
Demirdjian, Roberto D. Lins, James M. Briggs, Ricardo Ferreira and J. Andrew
McCammon 733-745
NMR and Molecular Dynamics Studies of Tachykinins: Conformation of Substance
P Fragment 4-11
Evans Coutinho, Shantaram
Kamath, Anil Saran and Sudha Srivastava 747-755